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    Duplicated homeodomain-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820299, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Duplicated homeodomain-like superfamily protein
    Primary source
    TAIR:AT3G11280
    Locus tag
    AT3G11280
    See related
    Araport:AT3G11280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYB-LIKE PROTEIN; TF2
    Summary
    Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (3533207..3534994, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene WUSCHEL related homeobox 5 Neighboring gene Mov34/MPN/PAD-1 family protein Neighboring gene tRNA-Arg Neighboring gene Myb/SANT-like DNA-binding domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulatory functions of nuclear hexokinase1 complex in glucose signaling. Cho YH, et al. Cell, 2006 Nov 3. PMID 17081979
    2. Interplay of MYB factors in differential cell expansion, and consequences for tomato fruit development. Machemer K, et al. Plant J, 2011 Oct. PMID 21707804
    3. Identification of NPR1-dependent and independent genes early induced by salicylic acid treatment in Arabidopsis. Blanco F, et al. Plant Mol Biol, 2005 Dec. PMID 16307367
    4. Global analysis of della direct targets in early gibberellin signaling in Arabidopsis. Zentella R, et al. Plant Cell, 2007 Oct. PMID 17933900, Free PMC Article
    5. A stele-enriched gene regulatory network in the Arabidopsis root. Brady SM, et al. Mol Syst Biol, 2011 Jan 18. PMID 21245844, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111963.3
    NM_180227.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to gibberellin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Duplicated homeodomain-like superfamily protein
    NP_187737.1
    • Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
    NP_850558.1
    • Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3533207..3534994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180227.4 → NP_850558.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850558.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VM10, A0A384KX37, Q8LG33, Q9C773
      Conserved Domains (2) summary
      TIGR01557
      Location:124 → 176
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00167
      Location:33 → 78
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. NM_111963.3 → NP_187737.1  Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187737.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VM10, A0A384KX37, Q8LG33, Q9C773
      Conserved Domains (2) summary
      TIGR01557
      Location:124 → 176
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00167
      Location:33 → 78
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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