U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ribosomal protein L10 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820296, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Ribosomal protein L10 family protein
    Primary source
    TAIR:AT3G11250
    Locus tag
    AT3G11250
    See related
    Araport:AT3G11250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (3521329..3523071)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene Paxneb protein-like protein Neighboring gene Yippee family putative zinc-binding protein Neighboring gene arginine-tRNA protein transferase 2 Neighboring gene WUSCHEL related homeobox 5 Neighboring gene Mov34/MPN/PAD-1 family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Siodmak A, et al. Nucleic Acids Res, 2023 Nov 27. PMID 37823590, Free PMC Article
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_111960.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ribosomal protein L10 family protein
    NP_187734.1
    • Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, translation; LOCATED IN: cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G09200.1); Has 1983 Blast hits to 1980 proteins in 500 species: Archae - 322; Bacteria - 1; Metazoa - 680; Fungi - 420; Plants - 226; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3521329..3523071
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111960.4 → NP_187734.1  Ribosomal protein L10 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187734.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P57691, Q8LAM3
      UniProtKB/TrEMBL
      A0A178V4X3
      Conserved Domains (3) summary
      cd05795
      Location:8 → 184
      Ribosomal_P0_L10e; Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk ...
      PTZ00135
      Location:1 → 277
      PTZ00135; 60S acidic ribosomal protein P0; Provisional
      pfam00428
      Location:234 → 320
      Ribosomal_60s; 60s Acidic ribosomal protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P57691.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools