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    fip1 motif-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819846, updated on 18-Sep-2024

    Summary

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    Official Full Name
    fip1 motif-containing protein
    Primary source
    TAIR:AT3G66652
    Locus tag
    AT3G66652
    See related
    Araport:AT3G66652
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8E24.6; T8E24_6
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (2083394..2087793)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene protein kinase family protein Neighboring gene PAS domain-containing protein tyrosine kinase family protein Neighboring gene ATP-citrate lyase B-1 Neighboring gene Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene AGAMOUS-like 91

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. Hunt AG, et al. BMC Genomics, 2008 May 14. PMID 18479511, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001202901.2
    NM_001340220.1
    NM_111542.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    fip1 motif-containing protein
    NP_001189830.1
    • fip1 motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Fip1 (InterPro:IPR007854); BEST Arabidopsis thaliana protein match is: homolog of yeast FIP1 [V] (TAIR:AT5G58040.1).
    NP_187318.2
    • fip1 motif-containing protein; CONTAINS InterPro DOMAIN/s: Fip1 (InterPro:IPR007854); BEST Arabidopsis thaliana protein match is: homolog of yeast FIP1 [V] (TAIR:AT5G58040.1); Has 1059 Blast hits to 916 proteins in 236 species: Archae - 0; Bacteria - 82; Metazoa - 441; Fungi - 209; Plants - 110; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2083394..2087793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202901.2 → NP_001189830.1  fip1 motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189830.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JC20, Q9C834, Q9C904
      UniProtKB/TrEMBL
      A0A178V8X1
      Conserved Domains (1) summary
      pfam05182
      Location:159 → 195
      Fip1; Fip1 motif

    2. NM_111542.2 → NP_187318.2  fip1 motif-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187318.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JC20, Q9C834, Q9C904
      UniProtKB/TrEMBL
      A0A178V8X1
      Conserved Domains (1) summary
      pfam05182
      Location:159 → 195
      Fip1; Fip1 motif

    3. NM_001340220.1 → NP_001326511.1  fip1 motif-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JC20, Q9C834, Q9C904
      UniProtKB/TrEMBL
      A0A178V8X1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JC20.1

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