U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    YAB3 Plant-specific transcription factor YABBY family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827914, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    YAB3
    Official Full Name
    Plant-specific transcription factor YABBY family protein
    Primary source
    TAIR:AT4G00180
    Locus tag
    AT4G00180
    See related
    Araport:AT4G00180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N15.22; F6N15_22; YABBY3
    Summary
    YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See YAB3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (72545..75576, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene Plant VAMP (vesicle-associated membrane protein) family protein Neighboring gene ncRNA Neighboring gene pectin methylesterase 38

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Control of Arabidopsis leaf morphogenesis through regulation of the YABBY and KNOX families of transcription factors. Ha CM, et al. Genetics, 2010 Sep. PMID 20610407, Free PMC Article
    2. Signals derived from YABBY gene activities in organ primordia regulate growth and partitioning of Arabidopsis shoot apical meristems. Goldshmidt A, et al. Plant Cell, 2008 May. PMID 18469164, Free PMC Article
    3. Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Siegfried KR, et al. Development, 1999 Sep. PMID 10457020
    4. A genetic framework for fruit patterning in Arabidopsis thaliana. Dinneny JR, et al. Development, 2005 Nov. PMID 16192305
    5. Organ polarity in Arabidopsis. NOZZLE physically interacts with members of the YABBY family. Sieber P, et al. Plant Physiol, 2004 Aug. PMID 15299139, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Mutation of these YAB and KNOX1 genes together causes nearly complete suppression of bop1 bop2 ectopic organ outgrowth at the morphological and cellular levels.
      Title: Control of Arabidopsis leaf morphogenesis through regulation of the YABBY and KNOX families of transcription factors.
    2. YAB3 interact with LUG and LUH. Together these proteins maintain leaf polarity and meristem activity in Arabidopsis.
      Title: YABBYs and the transcriptional corepressors LEUNIG and LEUNIG_HOMOLOG maintain leaf polarity and meristem activity in Arabidopsis.
    3. Data show that mutations in the YABBY3 (YAB3) cause an array of defects, including aberrant phyllotaxis.
      Title: Signals derived from YABBY gene activities in organ primordia regulate growth and partitioning of Arabidopsis shoot apical meristems.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001084868.2
    NM_116235.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abaxial cell fate specification IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within fruit development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in polarity specification of adaxial/abaxial axis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of leaf development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of shoot apical meristem development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Plant-specific transcription factor YABBY family protein
    NP_001078337.1
    • YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
    NP_567154.1
    • YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      72545..75576 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116235.3 → NP_567154.1  Plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567154.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81319, Q9XFB1
      UniProtKB/TrEMBL
      A0A178V364, A0A5S9XNS0
      Conserved Domains (1) summary
      pfam04690
      Location:20 → 201
      YABBY; YABBY protein

    2. NM_001084868.2 → NP_001078337.1  Plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078337.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRG7
      Conserved Domains (1) summary
      pfam04690
      Location:2 → 170
      YABBY; YABBY protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XFB1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools