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    Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827005, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pectin lyase-like superfamily protein
    Primary source
    TAIR:AT4G13710
    Locus tag
    AT4G13710
    See related
    Araport:AT4G13710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18A5.100; F18A5_100
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Sequence:
    Chromosome: 4; NC_003075.7 (7962428..7966521)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RNA-binding protein Neighboring gene purple acid phosphatase 23 Neighboring gene Inosine triphosphate pyrophosphatase family protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001203791.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lyase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables pectate lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pectin lyase-like superfamily protein
    NP_001190720.1
    • Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G24230.1).
    NP_567409.1
    • Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G24230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7962428..7966521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117445.3 → NP_567409.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567409.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23668, Q944R1, Q9SVP1
      UniProtKB/TrEMBL
      A0A178UXZ8, A0A5S9XS06
      Conserved Domains (1) summary
      smart00656
      Location:196 → 390
      Amb_all; Amb_all domain

    2. NM_001203791.1 → NP_001190720.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190720.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XS06, F4JTS3
      Conserved Domains (2) summary
      smart00656
      Location:177 → 371
      Amb_all; Amb_all domain
      pfam13229
      Location:197 → 309
      Beta_helix; Right handed beta helix region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q944R1.1

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