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    VPS24.2 SNF7 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823635, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VPS24.2
    Official Full Name
    SNF7 family protein
    Primary source
    TAIR:AT3G45000
    Locus tag
    AT3G45000
    See related
    Araport:AT3G45000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    VPS24
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    Genomic context

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    See VPS24.2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (16460103..16461407)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene xyloglucan endo-transglycosylase-related 8 Neighboring gene serine carboxypeptidase-like 48 Neighboring gene Ribosomal L18p/L5e family protein Neighboring gene Ribosomal protein S10p/S20e family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
    2. Exploring the ESCRTing machinery in eukaryotes. Winter V, et al. Trends Plant Sci, 2006 Mar. PMID 16488176, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_114369.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT III complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF7 family protein
    NP_001154665.1
    • VPS24.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G22950.1); Has 820 Blast hits to 820 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 161; Plants - 253; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
    NP_190086.1
    • VPS24.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G22950.1); Has 1075 Blast hits to 1075 proteins in 225 species: Archae - 8; Bacteria - 4; Metazoa - 406; Fungi - 234; Plants - 299; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      16460103..16461407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161193.1 → NP_001154665.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154665.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J4C4
      Conserved Domains (1) summary
      cl21588
      Location:1 → 95
      Snf7; Snf7

    2. NM_114369.1 → NP_190086.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190086.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LXH5
      Conserved Domains (1) summary
      cl21588
      Location:10 → 156
      Snf7; Snf7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXH5.1

    Gene LinkOut

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