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    PEX11B peroxin 11B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823897, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PEX11B
    Official Full Name
    peroxin 11B
    Primary source
    TAIR:AT3G47430
    Locus tag
    AT3G47430
    See related
    Araport:AT3G47430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    peroxin 11B
    Summary
    member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.
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    Genomic context

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    See PEX11B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (17480521..17481800)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene putative glycerol-3-phosphate transporter 1 Neighboring gene tonoplast intrinsic protein 5;1 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Structural maintenance of chromosomes (SMC) family protein Neighboring gene light-harvesting chlorophyll-protein complex I subunit A4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light induces peroxisome proliferation in Arabidopsis seedlings through the photoreceptor phytochrome A, the transcription factor HY5 HOMOLOG, and the peroxisomal protein PEROXIN11b. Desai M, et al. Plant Physiol, 2008 Mar. PMID 18203870, Free PMC Article
    2. The Arabidopsis chloroplast division protein DYNAMIN-RELATED PROTEIN5B also mediates peroxisome division. Zhang X, et al. Plant Cell, 2010 Feb. PMID 20179140, Free PMC Article
    3. The PEROXIN11 protein family controls peroxisome proliferation in Arabidopsis. Orth T, et al. Plant Cell, 2007 Jan. PMID 17220199, Free PMC Article
    4. Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants. Nito K, et al. Plant Cell Physiol, 2007 Jun. PMID 17478547
    5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Light induces proliferation of peroxisomes in Arabidopsis seedlings and PEX11b plays an important role in mediating this process.
      Title: Light induces peroxisome proliferation in Arabidopsis seedlings through the photoreceptor phytochrome A, the transcription factor HY5 HOMOLOG, and the peroxisomal protein PEROXIN11b.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114611.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables identical protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within peroxisome fission IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within peroxisome organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in peroxisomal membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxin 11B
    NP_190327.1
    • peroxin 11B (PEX11B); CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11A (TAIR:AT1G47750.1); Has 320 Blast hits to 320 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 77; Fungi - 85; Plants - 134; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17480521..17481800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114611.4 → NP_190327.1  peroxin 11B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190327.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9STY0
      UniProtKB/TrEMBL
      A0A178V6A6, A0A5S9XJB9
      Conserved Domains (1) summary
      pfam05648
      Location:6 → 225
      PEX11; Peroxisomal biogenesis factor 11 (PEX11)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9STY0.1

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