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    ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824644, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARM repeat superfamily protein
    Primary source
    TAIR:AT3G54790
    Locus tag
    AT3G54790
    See related
    Araport:AT3G54790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (20281535..20285290, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene ncRNA Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ncRNA Neighboring gene Pleckstrin homology (PH) and lipid-binding START domains-containing protein Neighboring gene Plant-specific GATA-type zinc finger transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084817.1
    NM_001339699.1
    NM_115336.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ARM repeat superfamily protein
    NP_001078286.1
    • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 7003 Blast hits to 4423 proteins in 282 species: Archae - 0; Bacteria - 30; Metazoa - 1363; Fungi - 548; Plants - 4306; Viruses - 3; Other Eukaryotes - 753 (source: NCBI BLink).
    NP_191039.2
    • ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.1); Has 7024 Blast hits to 4442 proteins in 284 species: Archae - 0; Bacteria - 30; Metazoa - 1370; Fungi - 570; Plants - 4306; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20281535..20285290 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115336.5 → NP_191039.2  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191039.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWV5, Q9M1S1
      UniProtKB/TrEMBL
      A0A178VHB8, A0A5S9XKU2, A0A654FFV6
      Conserved Domains (3) summary
      PLN03200
      Location:511 → 754
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:599 → 624
      ARM; armadillo repeat [structural motif]
      pfam04564
      Location:238 → 310
      U-box; U-box domain

    2. NM_001084817.1 → NP_001078286.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078286.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHB8, A8MQL6
      Conserved Domains (3) summary
      cd00020
      Location:562 → 670
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      pfam04564
      Location:202 → 274
      U-box; U-box domain
      sd00043
      Location:563 → 588
      ARM; armadillo repeat [structural motif]

    3. NM_001339699.1 → NP_001325795.1  ARM repeat superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWV5, Q9M1S1
      UniProtKB/TrEMBL
      A0A178VHB8, A0A5S9XKU2, A0A654FFV6
      Conserved Domains (3) summary
      PLN03200
      Location:511 → 754
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:599 → 624
      ARM; armadillo repeat [structural motif]
      pfam04564
      Location:238 → 310
      U-box; U-box domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWV5.2

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