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    NTT C2H2-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824936, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NTT
    Official Full Name
    C2H2-type zinc finger family protein
    Primary source
    TAIR:AT3G57670
    Locus tag
    AT3G57670
    See related
    Araport:AT3G57670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    NO TRANSMITTING TRACT; WIP domain protein 2; WIP2
    Summary
    Encodes a a C2H2/C2HC zinc finger transcription factor specifically expressed in the transmitting tract and involved in transmitting tract development and pollen tube growth.
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    Genomic context

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    See NTT in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (21370757..21373591)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene lysophosphatidyl acyltransferase 2 Neighboring gene nuclear RNA polymerase A1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Peptidase S41 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fruit indehiscence caused by enhanced expression of NO TRANSMITTING TRACT in Arabidopsis thaliana. Chung KS, et al. Mol Cells, 2013 Jun. PMID 23515580, Free PMC Article
    2. The NTT gene is required for transmitting-tract development in carpels of Arabidopsis thaliana. Crawford BC, et al. Curr Biol, 2007 Jul 3. PMID 17600712
    3. New roles of NO TRANSMITTING TRACT and SEEDSTICK during medial domain development in Arabidopsis fruits. Herrera-Ubaldo H, et al. Development, 2019 Jan 2. PMID 30538100
    4. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Boex-Fontvieille E, et al. Front Plant Sci, 2016. PMID 27625656, Free PMC Article
    5. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Crawford BC, et al. Science, 2015 Feb 6. PMID 25612610

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the simultaneous loss of NTT and STK activity affects polysaccharide and lipid deposition and septum fusion, and delays entry of septum cells to their normal degradation program.
      Title: New roles of NO TRANSMITTING TRACT and SEEDSTICK during medial domain development in Arabidopsis fruits.
    2. NTT loss of function leads to reduced replum width and cell number, whereas increased expression promotes replum enlargement. NTT activates the homeobox gene BP, which, together with RPL, is important for replum development.
      Title: The NTT transcription factor promotes replum development in Arabidopsis fruits.
    3. These results indicate that NTT suppresses FUL, indicating a potential role in patterning of the silique.
      Title: Fruit indehiscence caused by enhanced expression of NO TRANSMITTING TRACT in Arabidopsis thaliana.
    4. Required for transmitting-tract development; mutations cause reduced fertility by severely inhibiting pollen-tube movement [NTT]
      Title: The NTT gene is required for transmitting-tract development in carpels of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115627.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell fate determination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in fruit replum development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within primary root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within transmitting tissue development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    C2H2-type zinc finger family protein
    NP_191326.1
    • NO TRANSMITTING TRACT (NTT); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 4 (TAIR:AT3G20880.1); Has 16303 Blast hits to 11155 proteins in 263 species: Archae - 2; Bacteria - 36; Metazoa - 14565; Fungi - 231; Plants - 853; Viruses - 60; Other Eukaryotes - 556 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21370757..21373591
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115627.4 → NP_191326.1  C2H2-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191326.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84TI0, Q9SVY1
      UniProtKB/TrEMBL
      A0A178VLW5, A0A5S9XLQ5
      Conserved Domains (1) summary
      sd00017
      Location:303 → 319
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SVY1.1

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