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    IQD12 IQ-domain 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830275, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD12
    Official Full Name
    IQ-domain 12
    Primary source
    TAIR:AT5G03960
    Locus tag
    AT5G03960
    See related
    Araport:AT5G03960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8F6.170; F8F6_170; IQ-domain 12
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    Genomic context

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    See IQD12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (1068158..1070164, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene SGNH hydrolase-type esterase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001342739.1
    NM_001342740.1
    NM_120478.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    IQ-domain 12
    NP_196016.1
    • IQ-domain 12 (IQD12); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 11 (TAIR:AT5G13460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1068158..1070164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120478.4 → NP_196016.1  IQ-domain 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196016.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y170
      Conserved Domains (1) summary
      pfam13178
      Location:337 → 358
      DUF4005; Protein of unknown function (DUF4005)

    2. NM_001342739.1 → NP_001332454.1  IQ-domain 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8BH03, Q9LZB4
      UniProtKB/TrEMBL
      A0A5S9Y170
      Conserved Domains (1) summary
      pfam13178
      Location:338 → 358
      DUF4005; Protein of unknown function (DUF4005)

    3. NM_001342740.1 → NP_001332455.1  IQ-domain 12 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8BH03, Q9LZB4
      UniProtKB/TrEMBL
      A0A5S9Y170
      Conserved Domains (1) summary
      pfam13178
      Location:338 → 358
      DUF4005; Protein of unknown function (DUF4005)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A1P8BH03.1

    Gene LinkOut

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