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    Sodium/calcium exchanger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831653, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Sodium/calcium exchanger family protein
    Primary source
    TAIR:AT5G17850
    Locus tag
    AT5G17850
    See related
    Araport:AT5G17850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MVA3.200; MVA3_200
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (5898852..5901157)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene uncharacterized protein Neighboring gene calcium exchanger 7 Neighboring gene plastid-specific 50S ribosomal protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Endoplasmic reticulum-localized CCX2 is required for osmotolerance by regulating ER and cytosolic Ca(2+) dynamics in Arabidopsis. Corso M, et al. Proc Natl Acad Sci U S A, 2018 Apr 10. PMID 29581277, Free PMC Article
    2. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343526.1
    NM_121791.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium:sodium antiporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within calcium ion transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to osmotic stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Sodium/calcium exchanger family protein
    NP_001318589.1
    • Sodium/calcium exchanger family protein; FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: calcium exchanger 7 (TAIR:AT5G17860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5898852..5901157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343526.1 → NP_001318589.1  Sodium/calcium exchanger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FKP2
      UniProtKB/TrEMBL
      A0A178UBA6, A0A5S9Y5Q9, A0A654G272
      Conserved Domains (1) summary
      PLN03151
      Location:34 → 556
      PLN03151; cation/calcium exchanger; Provisional

    2. NM_121791.2 → NP_197287.1  Sodium/calcium exchanger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197287.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FKP2
      UniProtKB/TrEMBL
      A0A178UBA6, A0A5S9Y5Q9, A0A654G272
      Conserved Domains (1) summary
      PLN03151
      Location:34 → 556
      PLN03151; cation/calcium exchanger; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKP2.1

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