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    PLATZ transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834714, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PLATZ transcription factor family protein
    Primary source
    TAIR:AT5G46710
    Locus tag
    AT5G46710
    See related
    Araport:AT5G46710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MZA15.12; MZA15_12
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (18952603..18954692, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene beta HLH protein 71 Neighboring gene Tetraspanin family protein Neighboring gene AIG2-like (avirulence induced gene) family protein Neighboring gene glycine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001344695.1
    NM_001344696.1
    NM_124041.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PLATZ transcription factor family protein
    NP_199483.1
    • PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT4G17900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      18952603..18954692 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124041.4 → NP_199483.1  PLATZ transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199483.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UMA4, Q9FIQ4
      Conserved Domains (1) summary
      pfam04640
      Location:83 → 155
      PLATZ; PLATZ transcription factor

    2. NM_001344695.1 → NP_001331702.1  PLATZ transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEP3
      Conserved Domains (1) summary
      pfam04640
      Location:83 → 155
      PLATZ; PLATZ transcription factor

    3. NM_001344696.1 → NP_001331703.1  PLATZ transcription factor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEP4
      Conserved Domains (1) summary
      pfam04640
      Location:67 → 139
      PLATZ; PLATZ transcription factor
    Nucleotide Protein
    Heading Accession and Version

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