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    SHV2 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834987, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SHV2
    Official Full Name
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Primary source
    TAIR:AT5G49270
    Locus tag
    AT5G49270
    See related
    Araport:AT5G49270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COBL9; COBRA-LIKE 9; DEFORMED ROOT HAIRS 9; DER9; K21P3.15; K21P3_15; MRH4; MUTANT ROOT HAIR 4; SHAVEN 2
    Summary
    Involved in successfully establishing tip growth in root hairs.
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    Genomic context

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    See SHV2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (19971884..19974530, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Beta-galactosidase related protein Neighboring gene uncharacterized protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene ncRNA Neighboring gene receptor like protein 56

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis genes involved in acyl lipid metabolism. A 2003 census of the candidates, a study of the distribution of expressed sequence tags in organs, and a web-based database. Beisson F, et al. Plant Physiol, 2003 Jun. PMID 12805597, Free PMC Article
    2. COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition. Li Z, et al. Biochem Biophys Res Commun, 2022 Mar 12. PMID 35104663
    3. Genetic interactions during root hair morphogenesis in Arabidopsis. Parker JS, et al. Plant Cell, 2000 Oct. PMID 11041890, Free PMC Article
    4. Analysis of the root-hair morphogenesis transcriptome reveals the molecular identity of six genes with roles in root-hair development in Arabidopsis. Jones MA, et al. Plant J, 2006 Jan. PMID 16367956
    5. The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Roudier F, et al. Plant Physiol, 2002 Oct. PMID 12376623, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition.
      Title: COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124304.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell tip growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cellulose microfibril organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within plant-type cell wall cellulose biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within root epidermal cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within root hair cell tip growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    NP_199738.1
    • SHAVEN 2 (SHV2); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein-7 precursor (TAIR:AT4G16120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19971884..19974530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124304.4 → NP_199738.1  COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199738.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FJ13
      UniProtKB/TrEMBL
      A0A178URZ2, A0A384L0N7, Q0WRJ1
      Conserved Domains (1) summary
      pfam04833
      Location:232 → 411
      COBRA; COBRA-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FJ13.1

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