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    hypothetical protein (DUF668) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835241, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF668)
    Primary source
    TAIR:AT5G51670
    Locus tag
    AT5G51670
    See related
    Araport:AT5G51670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K10D11.2; K10D11_2
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (20993424..20995644)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene cleavage and polyadenylation specificity factor 160 Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene 1-amino-cyclopropane-1-carboxylate synthase 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • At5g51670_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At5g51670_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)

    Homology

    NM_001344952.1
    NM_124546.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of growth IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF668)
    NP_001318781.1
    • Protein of unknown function (DUF668); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1); Has 324 Blast hits to 279 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20993424..20995644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344952.1 → NP_001318781.1  hypothetical protein (DUF668) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKN8, A0A5S9YE90, Q9LTD7
      Conserved Domains (2) summary
      pfam05003
      Location:314 → 400
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:39 → 95
      DUF3475; Domain of unknown function (DUF3475)

    2. NM_124546.3 → NP_199980.1  hypothetical protein (DUF668) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199980.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UKN8, A0A5S9YE90, Q9LTD7
      Conserved Domains (2) summary
      pfam05003
      Location:314 → 400
      DUF668; Protein of unknown function (DUF668)
      pfam11961
      Location:39 → 95
      DUF3475; Domain of unknown function (DUF3475)
    Nucleotide Protein
    Heading Accession and Version

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