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    SHOC1 shortage in chiasmata 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835305, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SHOC1
    Official Full Name
    shortage in chiasmata 1
    Primary source
    TAIR:AT5G52290
    Locus tag
    AT5G52290
    See related
    Araport:AT5G52290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K24M7.2; K24M7_2; SHORTAGE IN CHIASMATA 1
    Summary
    Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility.
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    Genomic context

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    See SHOC1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (21230224..21236554, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SNARE-like superfamily protein Neighboring gene miscRNA Neighboring gene Myosin heavy chain-related protein Neighboring gene CAP160 protein Neighboring gene low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SHOC1, an XPF endonuclease-related protein, is essential for the formation of class I meiotic crossovers. Macaisne N, et al. Curr Biol, 2008 Sep 23. PMID 18812090
    2. SHOC1 and PTD form an XPF-ERCC1-like complex that is required for formation of class I crossovers. Macaisne N, et al. J Cell Sci, 2011 Aug 15. PMID 21771883
    3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_124608.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within resolution of meiotic recombination intermediates IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in resolution of meiotic recombination intermediates IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    shortage in chiasmata 1
    NP_200042.4
    • SHORTAGE IN CHIASMATA 1 (SHOC1); Has 68 Blast hits to 59 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 8; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21230224..21236554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124608.5 → NP_200042.4  shortage in chiasmata 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200042.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B6D435, F4KG50, Q9FHD0
      UniProtKB/TrEMBL
      A0A178UN30
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4KG50.1

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