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    RPL24 Translation protein SH3-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835549, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPL24
    Official Full Name
    Translation protein SH3-like family protein
    Primary source
    TAIR:AT5G54600
    Locus tag
    AT5G54600
    See related
    Araport:AT5G54600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MRB17.10; MRB17_10; plastid ribosomal protein L24; SUPPRESSOR OF VARIEGATION 8; SVR8
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    Genomic context

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    See RPL24 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (22182843..22184610)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene ankyrin Neighboring gene ncRNA Neighboring gene Ankyrin repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The plastid-specific ribosomal proteins of Arabidopsis thaliana can be divided into non-essential proteins and genuine ribosomal proteins. Tiller N, et al. Plant J, 2012 Jan. PMID 21923745
    2. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
    3. Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. Rutschow H, et al. Plant Physiol, 2008 Sep. PMID 18633119, Free PMC Article
    4. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124841.2
    NM_180859.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plastid translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in plastid HDA PubMed 
    located_in plastid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Translation protein SH3-like family protein
    NP_200271.2
    • Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256); Has 5683 Blast hits to 5683 proteins in 2214 species: Archae - 0; Bacteria - 4676; Metazoa - 35; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink).
    NP_851190.1
    • Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: chloroplast stroma, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825); BEST Arabidopsis thaliana protein match is: KOW domain-containing protein (TAIR:AT5G23535.1); Has 7434 Blast hits to 7434 proteins in 2595 species: Archae - 0; Bacteria - 5337; Metazoa - 128; Fungi - 18; Plants - 114; Viruses - 0; Other Eukaryotes - 1837 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22182843..22184610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180859.2 → NP_851190.1  Translation protein SH3-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851190.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P92959, Q9FIU4
      UniProtKB/TrEMBL
      A0A178U954, A0A5S9YE17
      Conserved Domains (1) summary
      PRK00004
      Location:70 → 173
      rplX; 50S ribosomal protein L24; Reviewed

    2. NM_124841.2 → NP_200271.2  Translation protein SH3-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200271.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GB77, F4K1S8
      Conserved Domains (1) summary
      PRK00004
      Location:70 → 154
      rplX; 50S ribosomal protein L24; Reviewed
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P92959.2

    Gene LinkOut

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