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    ANK ankyrin [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835550, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ANK
    Official Full Name
    ankyrin
    Primary source
    TAIR:AT5G54610
    Locus tag
    AT5G54610
    See related
    Araport:AT5G54610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ankyrin; BDA1; bian da 2 (becoming big in Chinese); MRB17.11; MRB17_11
    Summary
    Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.
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    Genomic context

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    See ANK in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22184545..22186633, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene Translation protein SH3-like family protein Neighboring gene ncRNA Neighboring gene Ankyrin repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ankyrin-repeat transmembrane protein BDA1 functions downstream of the receptor-like protein SNC2 to regulate plant immunity. Yang Y, et al. Plant Physiol, 2012 Aug. PMID 22740615, Free PMC Article
    2. Unique nucleotide polymorphism of ankyrin gene cluster in Arabidopsis. Du J, et al. J Genet, 2007 Apr. PMID 17656846
    3. Identification of NPR1-dependent and independent genes early induced by salicylic acid treatment in Arabidopsis. Blanco F, et al. Plant Mol Biol, 2005 Dec. PMID 16307367
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_124842.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within innate immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin
    NP_200272.2
    • ankyrin (ANK); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G54620.1); Has 16763 Blast hits to 8871 proteins in 442 species: Archae - 14; Bacteria - 1401; Metazoa - 8955; Fungi - 670; Plants - 1865; Viruses - 65; Other Eukaryotes - 3793 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22184545..22186633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124842.4 → NP_200272.2  ankyrin [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200272.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYH5, Q9FIU3
      UniProtKB/TrEMBL
      A0A178ULB9, A0A5S9YGB3, A0A654GB38
      Conserved Domains (3) summary
      COG0666
      Location:40 → 222
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:70 → 102
      ANK; ANK repeat [structural motif]
      pfam13962
      Location:286 → 372
      PGG; Domain of unknown function
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GYH5.1

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