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    SUMO3 small ubiquitin-like modifier 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835610, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SUMO3
    Official Full Name
    small ubiquitin-like modifier 3
    Primary source
    TAIR:AT5G55170
    Locus tag
    AT5G55170
    See related
    Araport:AT5G55170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSUMO3; MCO15.12; MCO15_12; small ubiquitin-like modifier 3; SMALL UBIQUITIN-LIKE MODIFIER 3; SUM3; SUMO 3
    Summary
    Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.
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    Genomic context

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    See SUMO3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (22385257..22386223, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box SKIP23-like protein (DUF295) Neighboring gene small ubiquitin-like modifier 2 Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene RAN GTPase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phototropin Interactions with SUMO Proteins. Łabuz J, et al. Plant Cell Physiol, 2021 Sep 24. PMID 33594440, Free PMC Article
    2. Arabidopsis small ubiquitin-like modifier paralogs have distinct functions in development and defense. van den Burg HA, et al. Plant Cell, 2010 Jun. PMID 20525853, Free PMC Article
    3. Distinctive properties of Arabidopsis SUMO paralogues support the in vivo predominant role of AtSUMO1/2 isoforms. Castaño-Miquel L, et al. Biochem J, 2011 Jun 15. PMID 21413927, Free PMC Article
    4. The small ubiquitin-like modifier (SUMO) protein modification system in Arabidopsis. Accumulation of SUMO1 and -2 conjugates is increased by stress. Kurepa J, et al. J Biol Chem, 2003 Feb 28. PMID 12482876
    5. Evolution of a signalling system that incorporates both redundancy and diversity: Arabidopsis SUMOylation. Chosed R, et al. Biochem J, 2006 Sep 15. PMID 16740136, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Phototropin Interactions with SUMO Proteins.
      Title: Phototropin Interactions with SUMO Proteins.
    2. SUM3 promotes plant defense downstream of salicylic acid, while SUM1 and SUM2 together prevent salicylic acid accumulation in noninfected plants.
      Title: Arabidopsis small ubiquitin-like modifier paralogs have distinct functions in development and defense.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001345118.1
    NM_001345119.1
    NM_124899.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein tag activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein sumoylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within protein sumoylation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    small ubiquitin-like modifier 3
    NP_200328.1
    • small ubiquitin-like modifier 3 (SUMO3); CONTAINS InterPro DOMAIN/s: Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      22385257..22386223 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124899.4 → NP_200328.1  small ubiquitin-like modifier 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200328.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLP5
      UniProtKB/TrEMBL
      A0A5S9YE80, A0A7G2FMP8
      Conserved Domains (1) summary
      cl28922
      Location:16 → 86
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. NM_001345118.1 → NP_001330303.1  small ubiquitin-like modifier 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAF0

    3. NM_001345119.1 → NP_001330302.1  small ubiquitin-like modifier 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BAE6, A0A5S9YE80
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FLP5.1

    Gene LinkOut

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