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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832639, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT5G25630
    Locus tag
    AT5G25630
    See related
    Araport:AT5G25630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T14C9.170; T14C9_170
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (8947223..8949741)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Flavin-binding monooxygenase family protein Neighboring gene tRNA-Phe Neighboring gene Rhomboid-related intramembrane serine protease family protein Neighboring gene uncharacterized protein Neighboring gene RNA polymerase I-associated factor PAF67

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_122474.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001190400.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G21222.1).
    NP_197945.2
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: protein kinase family protein (TAIR:AT5G21222.1); Has 43023 Blast hits to 13141 proteins in 298 species: Archae - 3; Bacteria - 54; Metazoa - 633; Fungi - 665; Plants - 40141; Viruses - 0; Other Eukaryotes - 1527 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8947223..8949741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203471.1 → NP_001190400.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190400.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JY71
      Conserved Domains (6) summary
      TIGR00756
      Location:189 → 223
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:152 → 179
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:151 → 180
      PPR; PPR repeat
      pfam12854
      Location:421 → 450
      PPR_1; PPR repeat
      pfam13041
      Location:354 → 402
      PPR_2; PPR repeat family
      pfam13812
      Location:459 → 492
      PPR_3; Pentatricopeptide repeat domain

    2. NM_001343943.1 → NP_001331721.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQ89, A0A1P8BEQ9, A0A384L6V6
      Conserved Domains (3) summary
      PLN03218
      Location:67 → 390
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:101 → 128
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:24 → 74
      PPR_3; Pentatricopeptide repeat domain

    3. NM_122474.4 → NP_197945.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197945.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JY72, Q8GZ63
      UniProtKB/TrEMBL
      A0A178USB5, A0A5S9Y7K8
      Conserved Domains (3) summary
      PLN03218
      Location:118 → 441
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:152 → 179
      PPR; PPR repeat [structural motif]
      pfam13812
      Location:75 → 125
      PPR_3; Pentatricopeptide repeat domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GZ63.2

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