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    ATSUV3 ATP-dependent RNA helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827134, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATSUV3
    Official Full Name
    ATP-dependent RNA helicase
    Primary source
    TAIR:AT4G14790
    Locus tag
    AT4G14790
    See related
    Araport:AT4G14790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3435C; EDA15; embryo sac development arrest 15; FCAALL.309; suppressor of Var 3; SUV3
    Summary
    encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA.
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    Genomic context

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    See ATSUV3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Sequence:
    Chromosome: 4; NC_003075.7 (8495701..8500237, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene kinase interacting (KIP1-like) family protein Neighboring gene TESMIN/TSO1-like CXC 2 Neighboring gene Protein kinase superfamily protein Neighboring gene SCR-like 23 Neighboring gene 20S proteasome beta subunit D2 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An RNA helicase (AtSUV3) is present in Arabidopsis thaliana mitochondria. Gagliardi D, et al. FEBS Lett, 1999 Sep 24. PMID 10570936
    2. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
    3. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
    4. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117564.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within megagametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase
    NP_193215.2
    • ATSUV3; CONTAINS InterPro DOMAIN/s: Mitochondrial degradasome RNA helicase subunit C-terminal (InterPro:IPR022192), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, mitochondrial, putative (TAIR:AT5G39840.1); Has 3666 Blast hits to 3643 proteins in 672 species: Archae - 20; Bacteria - 977; Metazoa - 276; Fungi - 353; Plants - 117; Viruses - 18; Other Eukaryotes - 1905 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8495701..8500237 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340972.1 → NP_001328228.1  ATP-dependent RNA helicase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23335, Q0WMU8, Q9SMX1
      UniProtKB/TrEMBL
      A0A178V2P1, A0A5S9XT39, A0A654FPA0, A0A7G2EZM2
      Conserved Domains (4) summary
      cd18805
      Location:234 → 368
      SF2_C_suv3; C-terminal helicase domain of ATP-dependent RNA helicase
      cd17913
      Location:89 → 230
      DEXQc_Suv3; DEXQ-box helicase domain of Suv3
      pfam12513
      Location:505 → 551
      SUV3_C; Mitochondrial degradasome RNA helicase subunit C terminal
      pfam18147
      Location:439 → 479
      Suv3_C_1; Suv3 C-terminal domain 1

    2. NM_117564.4 → NP_193215.2  ATP-dependent RNA helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193215.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23335, Q0WMU8, Q9SMX1
      UniProtKB/TrEMBL
      A0A178V2P1, A0A5S9XT39, A0A654FPA0, A0A7G2EZM2
      Conserved Domains (4) summary
      cd18805
      Location:234 → 368
      SF2_C_suv3; C-terminal helicase domain of ATP-dependent RNA helicase
      cd17913
      Location:89 → 230
      DEXQc_Suv3; DEXQ-box helicase domain of Suv3
      pfam12513
      Location:505 → 551
      SUV3_C; Mitochondrial degradasome RNA helicase subunit C terminal
      pfam18147
      Location:439 → 479
      Suv3_C_1; Suv3 C-terminal domain 1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SMX1.1

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