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    YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827349, updated on 18-Sep-2024

    Summary

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    Official Full Name
    YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
    Primary source
    TAIR:AT4G16510
    Locus tag
    AT4G16510
    See related
    Araport:AT4G16510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4280W; FCAALL.85
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (9302602..9305838)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Cystatin/monellin superfamily protein Neighboring gene root meristem growth factor Neighboring gene Ubiquitin-like superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001341106.1
    NM_117749.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
    NP_567502.1
    • YbaK/aminoacyl-tRNA synthetase-associated domain; CONTAINS InterPro DOMAIN/s: YbaK/aminoacyl-tRNA synthetase-associated domain (InterPro:IPR007214); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9302602..9305838
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117749.3 → NP_567502.1  YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567502.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URU7, A0A5S9XT09, A0A7G2F192, Q940I4
      Conserved Domains (1) summary
      cd04332
      Location:83 → 229
      YbaK_like; YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze ...

    2. NM_001341106.1 → NP_001328304.1  YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B477
    Nucleotide Protein
    Heading Accession and Version

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