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    tcb3 tricalbin [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542267, updated on 18-Sep-2024

    Summary

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    Official Symbol
    tcb3
    Official Full Name
    tricalbin
    Primary source
    PomBase:SPAPYUK71.03c
    Locus tag
    SPOM_SPAPYUK71.03C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    syn1
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    Genomic context

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    See tcb3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (2901946..2907214, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene P-type calcium transport ATPase Cta4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase complex II subunit Rpb7 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene translation elongation factor 2 eft201 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Polycystic kidney disease channel and synaptotagmin homologues play roles in schizosaccharomyces pombe cell wall synthesis/repair and membrane protein trafficking. Aydar E, et al. J Membr Biol, 2009 Jun. PMID 19543678
    2. SIN-inhibitory phosphatase complex promotes Cdc11p dephosphorylation and propagates SIN asymmetry in fission yeast. Singh NS, et al. Curr Biol, 2011 Dec 6. PMID 22119525, Free PMC Article
    3. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article
    4. A non-transcriptional role for the glucocorticoid receptor in mediating the cell stress response. Ptushkina M, et al. Sci Rep, 2017 Sep 21. PMID 28935859, Free PMC Article
    5. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables lipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phospholipid binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables protein-membrane adaptor activity IC
    Inferred by Curator
    more info
    		  
    Process Evidence Code Pubs
    involved_in ER to Golgi ceramide transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endoplasmic reticulum membrane organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endoplasmic reticulum-plasma membrane tethering ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum HDA PubMed 
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane of cell tip EXP
    Inferred from Experiment
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tricalbin

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      2901946..2907214 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019400.3 → NP_593974.1  tricalbin [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593974.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9UT00, Q9UTV4
      Conserved Domains (5) summary
      cd04040
      Location:1039 → 1153
      C2D_Tricalbin-like; C2 domain fourth repeat present in Tricalbin-like proteins
      cd04044
      Location:434 → 555
      C2A_Tricalbin-like; C2 domain first repeat present in Tricalbin-like proteins
      cd04045
      Location:704 → 823
      C2C_Tricalbin-like; C2 domain third repeat present in Tricalbin-like proteins
      cd04052
      Location:581 → 686
      C2B_Tricalbin-like; C2 domain second repeat present in Tricalbin-like proteins
      COG5038
      Location:1 → 1225
      COG5038; Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials