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    Fam83f family with sequence similarity 83, member F [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315145, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fam83fprovided by RGD
    Official Full Name
    family with sequence similarity 83, member Fprovided by RGD
    Primary source
    RGD:1562089
    See related
    EnsemblRapid:ENSRNOG00000018330 AllianceGenome:RGD:1562089
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562089
    Summary
    Predicted to enable protein kinase binding activity. Predicted to be involved in signal transduction. Orthologous to human FAM83F (family with sequence similarity 83 member F). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 26.2), Testes (RPKM 14.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam83f in Genome Data Viewer
    Location:
    7q34
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (114091356..114120640)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (112211164..112240454)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (121889157..121918772)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ENTH domain containing 1 Neighboring gene ribosomal protein L22 like 1, pseudogene 3 Neighboring gene GRB2-related adaptor protein 2 Neighboring gene ribosomal protein L26, pseudogene 1 Neighboring gene trinucleotide repeat containing adaptor 6B Neighboring gene ribosomal protein L29, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables protein kinase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM83F

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130502.1 → NP_001123974.1  protein FAM83F

      See identical proteins and their annotated locations for NP_001123974.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473950
      UniProtKB/TrEMBL
      A6HSX5, D3ZAT7
      Related
      ENSRNOP00000024835.4, ENSRNOT00000024835.7
      Conserved Domains (2) summary
      cd09186
      Location:20 → 291
      PLDc_FAM83F_N; N-terminal phospholipase D-like domain of the uncharacterized protein, Family with sequence similarity 83F
      pfam13091
      Location:150 → 287
      PLDc_2; PLD-like domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      114091356..114120640
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039079276.1 → XP_038935204.1  protein FAM83F isoform X1

      Conserved Domains (1) summary
      cl15239
      Location:35 → 169
      PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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