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    BC035044 cDNA sequence BC035044 [ Mus musculus (house mouse) ]

    Gene ID: 232406, updated on 27-Nov-2024

    Summary

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    Official Symbol
    BC035044provided by MGI
    Official Full Name
    cDNA sequence BC035044provided by MGI
    Primary source
    MGI:MGI:2448540
    See related
    Ensembl:ENSMUSG00000090164 AllianceGenome:MGI:2448540
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in spleen adult (RPKM 3.2), thymus adult (RPKM 2.2) and 14 other tissues See more
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    Genomic context

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    See BC035044 in Genome Data Viewer
    Location:
    6 F3; 6 63.1 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (128825007..128868087, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (128848044..128891124, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene killer cell lectin-like receptor subfamily B member 1B Neighboring gene STARR-positive B cell enhancer ABC_E8136 Neighboring gene STARR-positive B cell enhancer ABC_E862 Neighboring gene STARR-positive B cell enhancer ABC_E8137 Neighboring gene STARR-positive B cell enhancer ABC_E863 Neighboring gene predicted gene, 44066 Neighboring gene STARR-seq mESC enhancer starr_17467 Neighboring gene STARR-seq mESC enhancer starr_17468 Neighboring gene predicted gene, 34849 Neighboring gene STARR-seq mESC enhancer starr_17469 Neighboring gene STARR-positive B cell enhancer ABC_E8138 Neighboring gene STARR-positive B cell enhancer ABC_E8139 Neighboring gene thioredoxin domain containing 9 pseudogene Neighboring gene C-type lectin domain family 2, member i Neighboring gene predicted gene, 38905 Neighboring gene C-type lectin domain family 2, member g Neighboring gene predicted gene 15987 Neighboring gene STARR-seq mESC enhancer starr_17470 Neighboring gene microRNA 7649

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC232406

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001254946.1 → NP_001241875.1  uncharacterized protein LOC232406 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC102693, BC035044
      Consensus CDS
      CCDS57450.1
      UniProtKB/TrEMBL
      E0CXF8
      Related
      ENSMUSP00000125357.2, ENSMUST00000160290.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      128825007..128868087 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001254947.1: Suppressed sequence

      Description
      NM_001254947.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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