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    Taf9b TATA-box binding protein associated factor 9B [ Mus musculus (house mouse) ]

    Gene ID: 407786, updated on 9-Dec-2024

    Summary

    Official Symbol
    Taf9bprovided by MGI
    Official Full Name
    TATA-box binding protein associated factor 9Bprovided by MGI
    Primary source
    MGI:MGI:3039562
    See related
    Ensembl:ENSMUSG00000047242 AllianceGenome:MGI:3039562
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Taf9l
    Summary
    Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in several processes, including negative regulation of transcription by RNA polymerase II; positive regulation of cell growth; and protein stabilization. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex and transcription factor TFTC complex. Is expressed in tail. Orthologous to human TAF9B (TATA-box binding protein associated factor 9b). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 7.0), cortex adult (RPKM 6.5) and 25 other tissues See more
    Orthologs
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    Genomic context

    See Taf9b in Genome Data Viewer
    Location:
    X D; X 47.36 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (105250480..105264764, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (106206874..106221158, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene TM2 domain containing 2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E1985 Neighboring gene phosphoglycerate kinase 1 Neighboring gene fibronectin type III domain containing 3C2 Neighboring gene fibronectin type III domain containing 3C2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (2) 

    Pathways from PubChem

    General protein information

    Preferred Names
    transcription initiation factor TFIID subunit 9B
    Names
    TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor
    TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
    transcription-associated factor TAFII31L
    NP_001001176.2
    NP_001161460.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001176.2NP_001001176.2  transcription initiation factor TFIID subunit 9B isoform 2

      See identical proteins and their annotated locations for NP_001001176.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      BC051635, BC066223, CA559941
      Consensus CDS
      CCDS30340.1
      UniProtKB/Swiss-Prot
      A2AP80, Q3UXZ3, Q3V2M4, Q6NZA9, Q80WW6
      Related
      ENSMUSP00000059751.9, ENSMUST00000055497.15
      Conserved Domains (1) summary
      cd07979
      Location:13129
      TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
    2. NM_001167988.1NP_001161460.1  transcription initiation factor TFIID subunit 9B isoform 1

      See identical proteins and their annotated locations for NP_001161460.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK131710, BC066223
      Consensus CDS
      CCDS53170.1
      UniProtKB/TrEMBL
      A2AP82
      Related
      ENSMUSP00000109123.3, ENSMUST00000113495.9
      Conserved Domains (1) summary
      cd07979
      Location:57173
      TAF9; TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      105250480..105264764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)