U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Qser1 glutamine and serine rich 1 [ Mus musculus (house mouse) ]

    Gene ID: 99003, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Qser1provided by MGI
    Official Full Name
    glutamine and serine rich 1provided by MGI
    Primary source
    MGI:MGI:2138986
    See related
    Ensembl:ENSMUSG00000074994 AllianceGenome:MGI:2138986
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4732486I23Rik
    Summary
    Predicted to be located in chromosome. Orthologous to human QSER1 (glutamine and serine rich 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in limb E14.5 (RPKM 6.7), whole brain E14.5 (RPKM 6.5) and 28 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Qser1 in Genome Data Viewer
    Location:
    2 E2; 2 54.93 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (104585140..104649028, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (104754793..104818680, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis/trans isomerase, NIMA-interacting 1, retrogene 1 Neighboring gene DEP domain containing 7 Neighboring gene STARR-seq mESC enhancer starr_05294 Neighboring gene RIKEN cDNA 2310047K21 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:104657358-104657511 Neighboring gene predicted gene, 39898 Neighboring gene TAR DNA binding protein pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Role of TIF1alpha as a modulator of embryonic transcription in the mouse zygote. Torres-Padilla ME, et al. J Cell Biol, 2006 Jul 31. PMID 16880268, Free PMC Article
    2. NANOG-dependent function of TET1 and TET2 in establishment of pluripotency. Costa Y, et al. Nature, 2013 Mar 21. PMID 23395962, Free PMC Article
    3. A direct physical interaction between Nanog and Sox2 regulates embryonic stem cell self-renewal. Gagliardi A, et al. EMBO J, 2013 Aug 14. PMID 23892456, Free PMC Article
    4. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
    5. Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders. Li J, et al. Nat Neurosci, 2017 Aug. PMID 28671696, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • RP24-297H17.9

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    glutamine and serine-rich protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001123327.3 → NP_001116799.2  glutamine and serine-rich protein 1

      Status: VALIDATED

      Source sequence(s)
      BX908741
      Consensus CDS
      CCDS50653.1
      UniProtKB/Swiss-Prot
      A0A338P6K9, A2BIE1, Q3UR75
      Related
      ENSMUSP00000155882.2, ENSMUST00000231375.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      104585140..104649028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162743.1 → XP_036018636.1  glutamine and serine-rich protein 1 isoform X1

      Conserved Domains (3) summary
      PHA02939
      Location:1433 → 1493
      PHA02939; hypothetical protein; Provisional
      pfam13926
      Location:1579 → 1699
      DUF4211; Domain of unknown function (DUF4211)
      NF033849
      Location:384 → 728
      ser_rich_anae_1; serine-rich protein

    2. XM_006500459.4 → XP_006500522.1  glutamine and serine-rich protein 1 isoform X2

      Conserved Domains (3) summary
      PHA02939
      Location:1433 → 1493
      PHA02939; hypothetical protein; Provisional
      TIGR01000
      Location:377 → 650
      bacteriocin_acc; bacteriocin secretion accessory protein
      pfam13926
      Location:1579 → 1653
      DUF4211; Domain of unknown function (DUF4211)

    3. XM_006500460.5 → XP_006500523.1  glutamine and serine-rich protein 1 isoform X3

      Conserved Domains (2) summary
      PHA02939
      Location:1433 → 1493
      PHA02939; hypothetical protein; Provisional
      TIGR01000
      Location:377 → 650
      bacteriocin_acc; bacteriocin secretion accessory protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A338P6K9.1 GenPept UniProtKB/Swiss-Prot:A0A338P6K9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools