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    Zfp764l1 zinc finger protein 764 like 1 [ Mus musculus (house mouse) ]

    Gene ID: 101604, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Zfp764l1provided by MGI
    Official Full Name
    zinc finger protein 764 like 1provided by MGI
    Primary source
    MGI:MGI:2141981
    See related
    Ensembl:ENSMUSG00000078580 AllianceGenome:MGI:2141981
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E430018J23Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and transcription coregulator activity. Predicted to be involved in cellular response to glucocorticoid stimulus and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF764 (zinc finger protein 764). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in duodenum adult (RPKM 6.3), large intestine adult (RPKM 5.3) and 28 other tissues See more
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    Genomic context

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    See Zfp764l1 in Genome Data Viewer
    Location:
    7 F3; 7 69.49 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126988851..126992834, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (127390830..127393662, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 747 Neighboring gene STARR-positive B cell enhancer ABC_E9711 Neighboring gene zinc finger protein 764 Neighboring gene zinc finger protein 747 like 1 Neighboring gene STARR-positive B cell enhancer ABC_E4978 Neighboring gene STARR-positive B cell enhancer ABC_E4979 Neighboring gene SMT3 suppressor of mif two 3 homolog 2, pseudogene 2 (S. cerevisiae) Neighboring gene myeloma-overexpressed gene 2 protein homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transcription coregulator activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to glucocorticoid stimulus ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC101604

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198011.2 → NP_932128.2  uncharacterized protein LOC101604

      Status: VALIDATED

      Source sequence(s)
      AC133494
      Consensus CDS
      CCDS52407.1
      UniProtKB/TrEMBL
      E9PZQ8, Q6IS61
      Related
      ENSMUSP00000126288.2, ENSMUST00000165495.2
      Conserved Domains (5) summary
      smart00349
      Location:22 → 81
      KRAB; krueppel associated box
      COG5048
      Location:223 → 383
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:339 → 359
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 61
      KRAB; KRAB box
      pfam13465
      Location:351 → 376
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      126988851..126992834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321911.3 → XP_017177400.1  uncharacterized protein LOC101604 isoform X2

      UniProtKB/TrEMBL
      Q921X0
      Conserved Domains (3) summary
      COG5048
      Location:132 → 292
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:248 → 268
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl30559
      Location:79 → 166
      PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]

    2. XM_006507164.2 → XP_006507227.1  uncharacterized protein LOC101604 isoform X2

      UniProtKB/TrEMBL
      Q921X0
      Conserved Domains (3) summary
      COG5048
      Location:132 → 292
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:248 → 268
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl30559
      Location:79 → 166
      PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]

    3. XM_006507163.2 → XP_006507226.1  uncharacterized protein LOC101604 isoform X1

      UniProtKB/TrEMBL
      Q6IS61
      Conserved Domains (4) summary
      smart00349
      Location:22 → 80
      KRAB; krueppel associated box
      COG5048
      Location:222 → 382
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:338 → 358
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:382 → 401
      zf-H2C2_2; Zinc-finger double domain

    4. XM_030241946.2 → XP_030097806.1  uncharacterized protein LOC101604 isoform X2

      UniProtKB/TrEMBL
      Q921X0
      Conserved Domains (3) summary
      COG5048
      Location:132 → 292
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:248 → 268
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl30559
      Location:79 → 166
      PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]
    Nucleotide Protein Strain
    Heading Accession and Version

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