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    U5 small nuclear ribonucleoprotein helicase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818828, updated on 18-Sep-2024

    Summary

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    Official Full Name
    U5 small nuclear ribonucleoprotein helicase
    Primary source
    TAIR:AT2G42270
    Locus tag
    AT2G42270
    See related
    Araport:AT2G42270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24P15.18; T24P15_18
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (17604076..17611333)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytochrome P450, family 712, subfamily A, polypeptide 1 Neighboring gene uv-b-insensitive 4 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_129789.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    U5 small nuclear ribonucleoprotein helicase
    NP_181756.1
    • U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20124 Blast hits to 12378 proteins in 1898 species: Archae - 1780; Bacteria - 8009; Metazoa - 2781; Fungi - 2333; Plants - 1088; Viruses - 52; Other Eukaryotes - 4081 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17604076..17611333
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129789.2 → NP_181756.1  U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181756.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48534, Q93YW2
      UniProtKB/TrEMBL
      A0A7G2EGT6
      Conserved Domains (5) summary
      smart00490
      Location:790 → 884
      HELICc; helicase superfamily c-terminal domain
      smart00611
      Location:1837 → 2160
      SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
      COG1204
      Location:484 → 1270
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
      pfam00270
      Location:1353 → 1526
      DEAD; DEAD/DEAH box helicase
      pfam02889
      Location:1007 → 1310
      Sec63; Sec63 Brl domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O48534.1

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