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    Proline-rich extensin-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838982, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Proline-rich extensin-like family protein
    Primary source
    TAIR:AT1G23720
    Locus tag
    AT1G23720
    See related
    Araport:AT1G23720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O8.27; F5O8_27
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (8388297..8391623)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1645) Neighboring gene ncRNA Neighboring gene beta carbonic anhydrase 3 Neighboring gene Oxidoreductase, zinc-binding dehydrogenase family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332619.1
    NM_102220.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cell wall IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Proline-rich extensin-like family protein
    NP_173784.1
    • Proline-rich extensin-like family protein; FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; EXPRESSED IN: hypocotyl, root, carpel; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: Proline-rich extensin-like family protein (TAIR:AT4G13390.1); Has 541802 Blast hits to 61860 proteins in 2130 species: Archae - 1218; Bacteria - 96253; Metazoa - 194950; Fungi - 87318; Plants - 78001; Viruses - 13090; Other Eukaryotes - 70972 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8388297..8391623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332617.1 → NP_001320234.1  Proline-rich extensin-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM70

    2. NM_001332618.1 → NP_001320235.1  Proline-rich extensin-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM68

    3. NM_102220.1 → NP_173784.1  Proline-rich extensin-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173784.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9ZUC3

    4. NM_001332619.1 → NP_001320233.1  Proline-rich extensin-like family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AM97
    Nucleotide Protein
    Heading Accession and Version

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