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    JP630 BURP domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838987, updated on 18-Sep-2024

    Summary

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    Official Symbol
    JP630
    Official Full Name
    BURP domain-containing protein
    Primary source
    TAIR:AT1G23760
    Locus tag
    AT1G23760
    See related
    Araport:AT1G23760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O8.31; F5O8_31; PG3; POLYGALACTURONASE 3
    Summary
    Encodes aromatic rich glycoprotein JP630.
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    Genomic context

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    See JP630 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (8401808..8404301)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene beta carbonic anhydrase 3 Neighboring gene Oxidoreductase, zinc-binding dehydrogenase family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene F-box family protein Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_102224.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BURP domain-containing protein
    NP_173788.1
    • JP630; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 1783 Blast hits to 1423 proteins in 248 species: Archae - 0; Bacteria - 362; Metazoa - 287; Fungi - 197; Plants - 556; Viruses - 4; Other Eukaryotes - 377 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8401808..8404301
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102224.4 → NP_173788.1  BURP domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173788.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P92982, Q9S9K5
      UniProtKB/TrEMBL
      Q0WSP6
      Conserved Domains (1) summary
      smart01045
      Location:405 → 621
      BURP; The BURP domain is found at the C-terminus of several different plant proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P92982.2

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