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    XTH17 xyloglucan endotransglucosylase/hydrolase 17 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842839, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH17
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 17
    Primary source
    TAIR:AT1G65310
    Locus tag
    AT1G65310
    See related
    Araport:AT1G65310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATXTH17; T8F5.9; T8F5_9; xyloglucan endotransglucosylase/hydrolase 17; XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17
    Summary
    Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.
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    Genomic context

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    See XTH17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (24257054..24258506)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase Neighboring gene AGAMOUS-like 38 Neighboring gene Cystathionine beta-synthase (CBS) family protein Neighboring gene MADS-box transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Xyloglucan Endotransglucosylase-Hydrolase17 Interacts with Xyloglucan Endotransglucosylase-Hydrolase31 to Confer Xyloglucan Endotransglucosylase Action and Affect Aluminum Sensitivity in Arabidopsis. Zhu XF, et al. Plant Physiol, 2014 Aug. PMID 24948835, Free PMC Article
    2. The GLABRA2 homeodomain protein directly regulates CESA5 and XTH17 gene expression in Arabidopsis roots. Tominaga-Wada R, et al. Plant J, 2009 Nov. PMID 19619157
    3. Differences in enzymic properties of five recombinant xyloglucan endotransglucosylase/hydrolase (XTH) proteins of Arabidopsis thaliana. Maris A, et al. J Exp Bot, 2011 Jan. PMID 20732879
    4. Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24. Lee YK, et al. Plant Mol Biol, 2018 May. PMID 29616436
    5. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. LONGIFOLIA related genes play an important role in polar cell elongation by changing turgor pressure and controlling the activation of XTH17 and XTH24
      Title: Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24.
    2. only CESA5 and XTH17 were affected by the gl2 mutation.
      Title: The GLABRA2 homeodomain protein directly regulates CESA5 and XTH17 gene expression in Arabidopsis roots.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105205.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    NOT enables xyloglucan-specific endo-beta-1,4-glucanase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables xyloglucan:xyloglucosyl transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within xyloglucan metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 17
    NP_176710.1
    • xyloglucan endotransglucosylase/hydrolase 17 (XTH17); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 18 (TAIR:AT4G30280.1); Has 2226 Blast hits to 2204 proteins in 309 species: Archae - 0; Bacteria - 291; Metazoa - 0; Fungi - 455; Plants - 1386; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24257054..24258506
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334201.1 → NP_001321436.1  xyloglucan endotransglucosylase/hydrolase 17 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQT8, A0A5S9WSK8, A0A654EL73

    2. NM_105205.4 → NP_176710.1  xyloglucan endotransglucosylase/hydrolase 17 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176710.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80803
      UniProtKB/TrEMBL
      A0A5S9WSK8, A0A654EL73, A2RVL7
      Conserved Domains (1) summary
      cd02176
      Location:25 → 281
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80803.1

    Gene LinkOut

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