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    Zinc-binding ribosomal protein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838092, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc-binding ribosomal protein family protein
    Primary source
    TAIR:AT1G15250
    Locus tag
    AT1G15250
    See related
    Araport:AT1G15250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.46; F9L1_46
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (5248664..5249676, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SAWADEE HOMEODOMAIN protein Neighboring gene cytochrome c biogenesis protein family Neighboring gene uncharacterized protein Neighboring gene phox (PX) domain-containing protein Neighboring gene LOW protein: ATP-dependent RNA helicase-like protein Neighboring gene Translation machinery associated TMA7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332158.1
    NM_101393.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in extracellular region HDA PubMed 

    General protein information

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    Preferred Names
    Zinc-binding ribosomal protein family protein
    NP_001319009.1
    • Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1); Has 993 Blast hits to 993 proteins in 346 species: Archae - 293; Bacteria - 0; Metazoa - 305; Fungi - 141; Plants - 122; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5248664..5249676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332158.1 → NP_001319009.1  Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFH7
      UniProtKB/TrEMBL
      A0A178WEX9, A0A5S9UIV6, A0A7G2DT08
      Conserved Domains (1) summary
      PTZ00073
      Location:1 → 91
      PTZ00073; 60S ribosomal protein L37; Provisional

    2. NM_101393.4 → NP_172977.1  Zinc-binding ribosomal protein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172977.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFH7
      UniProtKB/TrEMBL
      A0A178WEX9, A0A5S9UIV6, A0A7G2DT08
      Conserved Domains (1) summary
      PTZ00073
      Location:1 → 91
      PTZ00073; 60S ribosomal protein L37; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LFH7.1

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