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    PIRL3 plant intracellular ras group-related LRR 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837855, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PIRL3
    Official Full Name
    plant intracellular ras group-related LRR 3
    Primary source
    TAIR:AT1G12970
    Locus tag
    AT1G12970
    See related
    Araport:AT1G12970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13K23.23; F13K23_23; plant intracellular ras group-related LRR 3
    Summary
    Encodes PIRL3, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
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    Genomic context

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    See PIRL3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (4423540..4425936)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene root hair specific 2 Neighboring gene Ribosomal protein L18e/L15 superfamily protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene beta-1,4-N-acetylglucosaminyltransferase family protein Neighboring gene transmembrane protein, putative (DUF707)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Plant Intracellular Ras-group LRR (PIRL) Family and the Value of Reverse Genetic Analysis for Identifying Genes that Function in Gametophyte Development. Forsthoefel NR, et al. Plants (Basel), 2013 Aug 9. PMID 27137390, Free PMC Article
    2. Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Nemoto K, et al. Phytochemistry, 2011 Jul. PMID 21477822
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101168.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity HDA PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within microgametogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein autophosphorylation HDA PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    plant intracellular ras group-related LRR 3
    NP_563921.1
    • plant intracellular ras group-related LRR 3 (PIRL3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1); Has 74858 Blast hits to 31563 proteins in 1228 species: Archae - 19; Bacteria - 7206; Metazoa - 30749; Fungi - 2417; Plants - 30057; Viruses - 17; Other Eukaryotes - 4393 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4423540..4425936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101168.2 → NP_563921.1  plant intracellular ras group-related LRR 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563921.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8W4Q3, Q9LPV2
      UniProtKB/TrEMBL
      A0A5S9U6J4, A0A654E9G0
      Conserved Domains (2) summary
      COG4886
      Location:185 → 385
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:163 → 185
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W4Q3.1

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