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    Pyridoxal-5'-phosphate-dependent enzyme family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842038, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pyridoxal-5'-phosphate-dependent enzyme family protein
    Primary source
    TAIR:AT1G55880
    Locus tag
    AT1G55880
    See related
    Araport:AT1G55880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14J16.13; F14J16_13
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20898793..20901247, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LOW protein: E3 ubiquitin ligase-like protein Neighboring gene ncRNA Neighboring gene ubiquitin-protein ligase Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene zinc transporter 11 precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104465.4
    NM_202309.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in cysteine biosynthetic process from serine IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pyridoxal-5'-phosphate-dependent enzyme family protein
    NP_175984.1
    • Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: lyase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, metabolic process, cellular amino acid metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: L-cysteine desulfhydrase 1 (TAIR:AT5G28030.1); Has 17388 Blast hits to 17372 proteins in 2648 species: Archae - 443; Bacteria - 11523; Metazoa - 365; Fungi - 537; Plants - 503; Viruses - 2; Other Eukaryotes - 4015 (source: NCBI BLink).
    NP_974038.1
    • Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: lyase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: cysteine biosynthetic process from serine, metabolic process, cellular amino acid metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (InterPro:IPR001216), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: L-cysteine desulfhydrase 1 (TAIR:AT5G28030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20898793..20901247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104465.4 → NP_175984.1  Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175984.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W638, A0A5S9WM84, Q6NKY5
      Conserved Domains (2) summary
      PLN02356
      Location:1 → 420
      PLN02356; phosphateglycerate kinase
      pfam00291
      Location:46 → 388
      PALP; Pyridoxal-phosphate dependent enzyme

    2. NM_202309.1 → NP_974038.1  Pyridoxal-5'-phosphate-dependent enzyme family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974038.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W638, A0A5S9WM84, F4I3G8
      Conserved Domains (1) summary
      cl00342
      Location:1 → 348
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
    Nucleotide Protein
    Heading Accession and Version

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