U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LBD41 LOB domain-containing protein 41 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821112, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LBD41
    Official Full Name
    LOB domain-containing protein 41
    Primary source
    TAIR:AT3G02550
    Locus tag
    AT3G02550
    See related
    Araport:AT3G02550
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16B3.18; F16B3_18; LOB domain-containing protein 41
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LBD41 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (536500..538126, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TCP-1/cpn60 chaperonin family protein Neighboring gene Rad23 UV excision repair protein family Neighboring gene uncharacterized protein Neighboring gene Ribosomal protein S7e family protein Neighboring gene Mannose-6-phosphate isomerase, type I

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability. Licausi F, et al. New Phytol, 2011 Apr. PMID 20840511
    2. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    3. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
    4. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    5. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_111122.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOB domain-containing protein 41
    NP_566175.1
    • LOB domain-containing protein 41 (LBD41); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 40 (TAIR:AT1G67100.1); Has 601 Blast hits to 600 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 601; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      536500..538126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111122.5 → NP_566175.1  LOB domain-containing protein 41 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566175.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG92, Q8LDD8, Q9M886
      UniProtKB/TrEMBL
      A0A178VEA5, A0A5S9X9I1
      Conserved Domains (2) summary
      PTZ00233
      Location:142 → 260
      PTZ00233; variable surface protein Vir18; Provisional
      pfam03195
      Location:4 → 107
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M886.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools