U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    FIB4 Plastid-lipid associated protein PAP / fibrillin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821921, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    FIB4
    Official Full Name
    Plastid-lipid associated protein PAP / fibrillin family protein
    Primary source
    TAIR:AT3G23400
    Locus tag
    AT3G23400
    See related
    Araport:AT3G23400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    fibrillin 4
    Summary
    Encodes FIBRILLIN 4 (FIB4). The fibrillins are a large family of chloroplast proteins that have been linked with stress tolerance and disease resistance. FIBRILLIN 4 is required for plastoglobule development and stress resistance.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See FIB4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (8376444..8378364, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ROP-interactive CRIB motif-containing protein 5 Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene fatty alcohol oxidase 3 Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. FIBRILLIN4 is required for plastoglobule development and stress resistance in apple and Arabidopsis. Singh DK, et al. Plant Physiol, 2010 Nov. PMID 20813909, Free PMC Article
    2. The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition. Caillaud MC, et al. PLoS Pathog, 2014 Oct. PMID 25393742, Free PMC Article
    3. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. Vidi PA, et al. J Biol Chem, 2006 Apr 21. PMID 16414959
    4. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
    5. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FIB4 is required for plastoglobule development and resistance to multiple stresses.
      Title: FIBRILLIN4 is required for plastoglobule development and stress resistance in apple and Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001338631.1
    NM_001338632.1
    NM_001338633.1
    NM_113243.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response to bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ozone IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plastoglobule HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid lumen HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Plastid-lipid associated protein PAP / fibrillin family protein
    NP_566728.1
    • fibrillin 4 (FIB4); FUNCTIONS IN: structural molecule activity; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 367 Blast hits to 365 proteins in 76 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8376444..8378364 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113243.4 → NP_566728.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566728.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBY7, Q9LW57
      UniProtKB/TrEMBL
      A0A178VGH8, A0A5S9XF64, A0A7G2ENP9
      Conserved Domains (1) summary
      pfam04755
      Location:97 → 282
      PAP_fibrillin

    2. NM_001338633.1 → NP_001326953.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQU5

    3. NM_001338632.1 → NP_001326951.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQU3

    4. NM_001338631.1 → NP_001326952.1  Plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQU3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LW57.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.