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    Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821398, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ankyrin repeat family protein
    Primary source
    TAIR:AT3G18670
    Locus tag
    AT3G18670
    See related
    Araport:AT3G18670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (6423900..6426561, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 103 Neighboring gene plant glycogenin-like starch initiation protein 1 Neighboring gene Amino acid kinase family protein Neighboring gene ncRNA Neighboring gene MAP kinase substrate 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ankyrin repeat family protein
    NP_188497.1
    • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G04700.1); Has 4772 Blast hits to 3121 proteins in 218 species: Archae - 7; Bacteria - 222; Metazoa - 2187; Fungi - 197; Plants - 1396; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6423900..6426561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338351.1 → NP_001325956.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XDL8, A0A654F8H4, Q9LSB0
      Conserved Domains (3) summary
      sd00045
      Location:83 → 118
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:88 → 177
      Ank_2; Ankyrin repeats (3 copies)
      pfam13962
      Location:487 → 597
      PGG; Domain of unknown function

    2. NM_112753.2 → NP_188497.1  Ankyrin repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188497.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHJ3, F4J8U1
      Conserved Domains (5) summary
      cd00204
      Location:79 → 174
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:292 → 351
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:84 → 141
      Ank_4; Ankyrin repeats (many copies)
      pfam13962
      Location:432 → 542
      PGG; Domain of unknown function
      sd00045
      Location:83 → 118
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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