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    SDRB short-chain dehydrogenase-reductase B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820462, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SDRB
    Official Full Name
    short-chain dehydrogenase-reductase B
    Primary source
    TAIR:AT3G12800
    Locus tag
    AT3G12800
    See related
    Araport:AT3G12800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT3G12790; DECR; short-chain dehydrogenase-reductase B
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    Genomic context

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    See SDRB in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (4063320..4064859, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene defective in cullin neddylation protein Neighboring gene mitochondrial editing factor 22 Neighboring gene ubiquitin-conjugating enzyme family protein Neighboring gene phosphoglycerate kinase 1 Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein Neighboring gene myb domain protein 10 Neighboring gene SAUR-like auxin-responsive protein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
    2. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    3. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    NM_112116.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 2,4-dienoyl-CoA reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in fatty acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in peroxisome HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    short-chain dehydrogenase-reductase B
    NP_187886.2
    • short-chain dehydrogenase-reductase B (SDRB); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G07640.1); Has 108804 Blast hits to 108592 proteins in 3545 species: Archae - 967; Bacteria - 72835; Metazoa - 4412; Fungi - 5364; Plants - 2598; Viruses - 2; Other Eukaryotes - 22626 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4063320..4064859 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112116.4 → NP_187886.2  short-chain dehydrogenase-reductase B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187886.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67Y37, Q680G7, Q9LTV6
      UniProtKB/TrEMBL
      A0A178V7H2, A0A5S9XBH8, A0A654F6I3, Q0WMN4
      Conserved Domains (1) summary
      cd05369
      Location:11 → 264
      TER_DECR_SDR_a; Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTV6.1

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