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    IDD7 indeterminate(ID)-domain 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841954, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IDD7
    Official Full Name
    indeterminate(ID)-domain 7
    Primary source
    TAIR:AT1G55110
    Locus tag
    AT1G55110
    See related
    Araport:AT1G55110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtIDD7; indeterminate(ID)-domain 7; T7N22.5; T7N22_5
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    Genomic context

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    See IDD7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (20560258..20563269, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene carbon-nitrogen hydrolase family protein Neighboring gene mediator of RNA polymerase II transcription subunit-like protein Neighboring gene pseudo Neighboring gene beta-fructofuranosidase 5 Neighboring gene Endomembrane protein 70 protein family Neighboring gene Ribonuclease III family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001333688.1
    NM_001333689.1
    NM_104384.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indeterminate(ID)-domain 7
    NP_175907.2
    • indeterminate(ID)-domain 7 (IDD7); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 11 (TAIR:AT3G13810.1); Has 54650 Blast hits to 21530 proteins in 476 species: Archae - 0; Bacteria - 0; Metazoa - 51826; Fungi - 384; Plants - 807; Viruses - 2; Other Eukaryotes - 1631 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20560258..20563269 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104384.4 → NP_175907.2  indeterminate(ID)-domain 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175907.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1F5, Q8RX03, Q9C722
      UniProtKB/TrEMBL
      A0A178WJ89, A0A654EIL2
      Conserved Domains (1) summary
      sd00017
      Location:171 → 190
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. NM_001333689.1 → NP_001322629.1  indeterminate(ID)-domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1F5, Q8RX03, Q9C722
      UniProtKB/TrEMBL
      A0A178WJ89, A0A654EIL2
      Conserved Domains (1) summary
      sd00017
      Location:171 → 190
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. NM_001333688.1 → NP_001322628.1  indeterminate(ID)-domain 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H1F5, Q8RX03, Q9C722
      UniProtKB/TrEMBL
      A0A178WJ89, A0A654EIL2
      Conserved Domains (1) summary
      sd00017
      Location:171 → 190
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H1F5.1

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