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    HIT-type Zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829003, updated on 18-Sep-2024

    Summary

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    Official Full Name
    HIT-type Zinc finger family protein
    Primary source
    TAIR:AT4G28820
    Locus tag
    AT4G28820
    See related
    Araport:AT4G28820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16A16.70; F16A16_70
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Sequence:
    Chromosome: 4; NC_003075.7 (14229408..14232380, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene mediator of RNA polymerase II transcription subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001036664.2
    NM_001341945.1
    NM_001341946.1
    NM_119026.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    HIT-type Zinc finger family protein
    NP_001031741.1
    • HIT-type Zinc finger family protein; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_194611.2
    • HIT-type Zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 375 Blast hits to 372 proteins in 152 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 117; Plants - 47; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14229408..14232380 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001341943.1 → NP_001329310.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B7B4, A0A5S9XXP5

    2. NM_001341944.1 → NP_001329312.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0K0, A0A1P8B7B3

    3. NM_001036664.2 → NP_001031741.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031741.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0K0, Q67Y48
      Conserved Domains (1) summary
      pfam04438
      Location:6 → 35
      zf-HIT; HIT zinc finger

    4. NM_001341945.1 → NP_001329311.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYH7, A0A1P8B7B0, A0A384LKP4

    5. NM_119026.3 → NP_194611.2  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194611.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XXP5, Q1RKP4
      Conserved Domains (1) summary
      pfam04438
      Location:6 → 35
      zf-HIT; HIT zinc finger

    6. NM_001341946.1 → NP_001329313.1  HIT-type Zinc finger family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V0V7, A0A1P8B7B1, A0A384LF34
    Nucleotide Protein
    Heading Accession and Version

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