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    SEP1 stress enhanced protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829567, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SEP1
    Official Full Name
    stress enhanced protein 1
    Primary source
    TAIR:AT4G34190
    Locus tag
    AT4G34190
    See related
    Araport:AT4G34190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10M10.5; stress enhanced protein 1
    Summary
    Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding.
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    Genomic context

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    See SEP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (16372333..16373736, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Cyclase family protein Neighboring gene D-3-phosphoglycerate dehydrogenase Neighboring gene carbohydrate esterase, putative (DUF303) Neighboring gene SKP1-like 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light stress-regulated two-helix proteins in Arabidopsis thaliana related to the chlorophyll a/b-binding gene family. Heddad M, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10725357, Free PMC Article
    2. Genetic and molecular interactions between BELL1 and MADS box factors support ovule development in Arabidopsis. Brambilla V, et al. Plant Cell, 2007 Aug. PMID 17693535, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_119582.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chlorophyll binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to UV-A IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in cellular response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to high light intensity IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stress enhanced protein 1
    NP_567958.1
    • stress enhanced protein 1 (SEP1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16372333..16373736 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119582.4 → NP_567958.1  stress enhanced protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567958.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49486, Q9M7I9
      UniProtKB/TrEMBL
      A0A178URT7, A0A5S9XYH7, A0A7G2F2S8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M7I9.1

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