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    Ubiquitin fusion degradation UFD1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830048, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ubiquitin fusion degradation UFD1 family protein
    Primary source
    TAIR:AT4G38930
    Locus tag
    AT4G38930
    See related
    Araport:AT4G38930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19H22.30; F19H22_30
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (18149533..18151793)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene basic pentacysteine 5 Neighboring gene vacuolar-type H[+]-ATPase C3 Neighboring gene ncRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001342513.1
    NM_001342514.1
    NM_120053.3
    NM_202980.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin fusion degradation UFD1 family protein
    NP_568048.1
    • Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_974709.1
    • Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      18149533..18151793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120053.3 → NP_568048.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568048.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5A2, A0A384LQG7, Q8W570
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1

    2. NM_202980.3 → NP_974709.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974709.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3D9, A0A384L5D3, Q9SVK0
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1

    3. NM_001342513.1 → NP_001328898.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V3D9, A0A384L5D3, Q9SVK0
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1

    4. NM_001342514.1 → NP_001328897.1  Ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V5A2, A0A384LQG7, Q8W570
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1
    Nucleotide Protein
    Heading Accession and Version

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