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    DAG1 Dof-type zinc finger DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825358, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DAG1
    Official Full Name
    Dof-type zinc finger DNA-binding family protein
    Primary source
    TAIR:AT3G61850
    Locus tag
    AT3G61850
    See related
    Araport:AT3G61850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BBFA; dof affecting germination 1
    Summary
    Zinc finger transcription factor of the Dof family involved in the control of seed germination.
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    Genomic context

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    See DAG1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (22895268..22897732)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene auxin response factor 18 Neighboring gene auxin response factor, putative (DUF688) Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene plant/protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Inactivation of the phloem-specific Dof zinc finger gene DAG1 affects response to light and integrity of the testa of Arabidopsis seeds. Papi M, et al. Plant Physiol, 2002 Feb. PMID 11842145, Free PMC Article
    2. Identification and disruption of an Arabidopsis zinc finger gene controlling seed germination. Papi M, et al. Genes Dev, 2000 Jan 1. PMID 10640273, Free PMC Article
    3. DOF AFFECTING GERMINATION 2 is a positive regulator of light-mediated seed germination and is repressed by DOF AFFECTING GERMINATION 1. Santopolo S, et al. BMC Plant Biol, 2015 Mar 4. PMID 25850831, Free PMC Article
    4. Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3 (RGA) in embryo development and seed germination. Boccaccini A, et al. BMC Plant Biol, 2014 Jul 26. PMID 25064446, Free PMC Article
    5. The DOF protein DAG1 and the DELLA protein GAI cooperate in negatively regulating the AtGA3ox1 gene. Boccaccini A, et al. Mol Plant, 2014 Sep. PMID 24719470

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. DAG2 is a positive regulator of the light-mediated seed germination process, and particularly reveal that this protein plays its main role downstream of PIL5 and DAG1 in the phytochrome B (phyB)-mediated pathway.
      Title: DOF AFFECTING GERMINATION 2 is a positive regulator of light-mediated seed germination and is repressed by DOF AFFECTING GERMINATION 1.
    2. GAI interacts with DAG1 in embryo development.
      Title: Independent and interactive effects of DOF affecting germination 1 (DAG1) and the Della proteins GA insensitive (GAI) and Repressor of ga1-3 (RGA) in embryo development and seed germination.
    3. DAG1 and the DELLA protein GAI cooperate in negatively regulating the AtGA3ox1 gene
      Title: The DOF protein DAG1 and the DELLA protein GAI cooperate in negatively regulating the AtGA3ox1 gene.
    4. ELIP (EARLY LIGHT-INDUCED PROTEIN) genes of Arabidopsis are involved in seed germination and that they act downstream of the Dof protein DAG1, although they are not its direct regulatory targets.
      Title: Inactivation of the ELIP1 and ELIP2 genes affects Arabidopsis seed germination.
    5. Data show that AtGA3ox1 is directly regulated by DAG1, and suggest that DAG1 is not a direct regulatory target of PIL5.
      Title: The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084858.1
    NM_001125413.2
    NM_001340130.1
    NM_116050.4
    NM_180403.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to red or far red light IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within seed germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Dof-type zinc finger DNA-binding family protein
    NP_001078327.1
    • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    NP_001118885.1
    • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_191744.1
    • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 1148 Blast hits to 1141 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
    NP_850734.1
    • dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22895268..22897732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125413.2 → NP_001118885.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118885.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H6D1
      Conserved Domains (1) summary
      pfam02701
      Location:74 → 129
      zf-Dof; Dof domain, zinc finger

    2. NM_116050.4 → NP_191744.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191744.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43385, Q8GYW3, Q9SAF9
      UniProtKB/TrEMBL
      B4F7P4
      Conserved Domains (1) summary
      pfam02701
      Location:74 → 129
      zf-Dof; Dof domain, zinc finger

    3. NM_180403.2 → NP_850734.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850734.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43385
      Conserved Domains (1) summary
      pfam02701
      Location:62 → 117
      zf-Dof; Dof domain, zinc finger

    4. NM_001340130.1 → NP_001325590.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCA9, A0A1I9LLP8, A0A384L283
      Conserved Domains (1) summary
      pfam02701
      Location:62 → 117
      zf-Dof; Dof domain, zinc finger

    5. NM_001084858.1 → NP_001078327.1  Dof-type zinc finger DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078327.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43385
      Conserved Domains (1) summary
      pfam02701
      Location:62 → 117
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q43385.2

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