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    PPa6 pyrophosphorylase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830824, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PPa6
    Official Full Name
    pyrophosphorylase 6
    Primary source
    TAIR:AT5G09650
    Locus tag
    AT5G09650
    See related
    Araport:AT5G09650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPPa6; F17I14.160; F17I14_160; pyrophosphorylase 6
    Summary
    Encodes a protein with inorganic pyrophosphatase activity.
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    Genomic context

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    See PPa6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (2991149..2993213, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene LisH/CRA/RING-U-box domains-containing protein Neighboring gene serine carboxypeptidase-like 19 Neighboring gene tRNA-Val Neighboring gene peroxisomal NAD-malate dehydrogenase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel subfamily of monomeric inorganic pyrophosphatases in photosynthetic eukaryotes. Gómez-García MR, et al. Biochem J, 2006 Apr 1. PMID 16313235, Free PMC Article
    2. Identification of an Arabidopsis inorganic pyrophosphatase capable of being imported into chloroplasts. Schulze S, et al. FEBS Lett, 2004 May 7. PMID 15135060
    3. Virus-induced gene silencing of plastidial soluble inorganic pyrophosphatase impairs essential leaf anabolic pathways and reduces drought stress tolerance in Nicotiana benthamiana. George GM, et al. Plant Physiol, 2010 Sep. PMID 20605913, Free PMC Article
    4. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
    5. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_121002.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables inorganic diphosphate phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables inorganic diphosphate phosphatase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphate-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plastid HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    pyrophosphorylase 6
    NP_196527.1
    • pyrophosphorylase 6 (PPa6); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 5 (TAIR:AT4G01480.1); Has 4681 Blast hits to 4677 proteins in 1304 species: Archae - 167; Bacteria - 3164; Metazoa - 258; Fungi - 287; Plants - 274; Viruses - 0; Other Eukaryotes - 531 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2991149..2993213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121002.3 → NP_196527.1  pyrophosphorylase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196527.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBD6, Q9LXC9
      UniProtKB/TrEMBL
      A0A178UER1, A0A5S9Y3G6, A0A7G2F9H2
      Conserved Domains (1) summary
      PLN02707
      Location:33 → 300
      PLN02707; Soluble inorganic pyrophosphatase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXC9.1

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