Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Heavy metal transport/detoxification superfamily protein
Primary source: TAIR:AT5G19090
Locus tag: AT5G19090
See related: Araport:AT5G19090
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T16G12.130; T16G12_130
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 4

Sequence:: Chromosome: 5; NC_003076.8 (6387341..6390179)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001161247.1

Supported by ESTs:

NM_001343587.1

Supported by ESTs:

NM_001343588.1

Supported by ESTs:

NM_121914.4

Supported by ESTs:

NM_180520.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: Heavy metal transport/detoxification superfamily protein

NP_001154719.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.2); Has 50176 Blast hits to 18818 proteins in 1086 species: Archae - 85; Bacteria - 11227; Metazoa - 17638; Fungi - 3230; Plants - 9788; Viruses - 1123; Other Eukaryotes - 7085 (source: NCBI BLink).

NP_197410.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NP_850851.1

Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT3G06130.2); Has 50176 Blast hits to 18818 proteins in 1086 species: Archae - 85; Bacteria - 11227; Metazoa - 17638; Fungi - 3230; Plants - 9788; Viruses - 1123; Other Eukaryotes - 7085 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

6387341..6390179

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_121914.4 → NP_197410.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_197410.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JZL7, F4JZL8, Q84WQ1

UniProtKB/TrEMBL

A0A178UG84, A0A5S9Y5E6

Conserved Domains (1) summary

cd00371
Location:13 → 72

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_001343587.1 → NP_001331475.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JZL7, F4JZL8, Q84WQ1

UniProtKB/TrEMBL

A0A178UG84, A0A5S9Y5E6

Conserved Domains (1) summary

cd00371
Location:13 → 72

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_001161247.1 → NP_001154719.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001154719.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JZL7

Conserved Domains (1) summary

cd00371
Location:13 → 72

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_180520.2 → NP_850851.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850851.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JZL7

Conserved Domains (1) summary

cd00371
Location:13 → 72

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
NM_001343588.1 → NP_001331474.1 Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

F4JZL7, F4JZL8, Q84WQ1

UniProtKB/TrEMBL

A0A178UG84, A0A5S9Y5E6

Conserved Domains (1) summary

cd00371
Location:13 → 72

HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...