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    cotton fiber protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833860, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cotton fiber protein
    Primary source
    TAIR:AT5G38700
    Locus tag
    AT5G38700
    See related
    Araport:AT5G38700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MBB18.26; MBB18_26
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (15489593..15490745)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene acclimation of photosynthesis to environment Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene Zinc-finger domain of monoamine-oxidase A repressor R1 protein Neighboring gene pseudo Neighboring gene Methylenetetrahydrofolate reductase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_123231.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    cotton fiber protein
    NP_198686.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15489593..15490745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123231.4 → NP_198686.2  cotton fiber protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198686.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UHJ9, A0A654G6A0, Q570M0
      Conserved Domains (1) summary
      pfam05553
      Location:149 → 178
      DUF761; Cotton fibre expressed protein
    Nucleotide Protein
    Heading Accession and Version

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