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    ion channel protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835060, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ion channel protein
    Primary source
    TAIR:AT5G49960
    Locus tag
    AT5G49960
    See related
    Araport:AT5G49960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K9P8.10; K9P8_10
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (20323785..20327881, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1682) Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene pyridoxin (pyrodoxamine) 5'-phosphate oxidase Neighboring gene auxin F-box protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nuclear calcium signatures are associated with root development. Leitão N, et al. Nat Commun, 2019 Oct 25. PMID 31653864, Free PMC Article
    2. The recent evolution of a symbiotic ion channel in the legume family altered ion conductance and improved functionality in calcium signaling. Venkateshwaran M, et al. Plant Cell, 2012 Jun. PMID 22706284, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001344864.1
    NM_124375.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ion channel protein
    NP_199807.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20323785..20327881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001344865.1 → NP_001331311.1  ion channel protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDJ3

    2. NM_124375.3 → NP_199807.1  ion channel protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199807.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LTX4
      UniProtKB/TrEMBL
      A0A178UGF1, A0A5S9YCM4
      Conserved Domains (2) summary
      PRK10537
      Location:248 → 382
      PRK10537; voltage-gated potassium channel protein
      pfam06241
      Location:434 → 536
      Castor_Poll_mid; Castor and Pollux, part of voltage-gated ion channel

    3. NM_001344864.1 → NP_001331312.1  ion channel protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDK3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LTX4.1

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