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    PHR2 photolyase/blue-light receptor 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819372, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PHR2
    Official Full Name
    photolyase/blue-light receptor 2
    Primary source
    TAIR:AT2G47590
    Locus tag
    AT2G47590
    See related
    Araport:AT2G47590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    photolyase/blue-light receptor 2; PHOTOLYASE/BLUE-LIGHT RECEPTOR 2; T30B22.11
    Summary
    photolyase/blue light photoreceptor PHR2 (PHR2) mRNA
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    Genomic context

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    See PHR2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (19521774..19524095)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene spliceosomal protein U1A Neighboring gene ncRNA Neighboring gene magnesium/proton exchanger Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcripts of MYB-like genes respond to phosphorous and nitrogen deprivation in Arabidopsis. Todd CD, et al. Planta, 2004 Oct. PMID 15592750
    2. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Expression in response to nitrogen and phosphorus deprivation.
      Title: Transcripts of MYB-like genes respond to phosphorous and nitrogen deprivation in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_130327.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA photolyase activity NAS
    Non-traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    photolyase/blue-light receptor 2
    NP_182281.1
    • photolyase/blue-light receptor 2 (PHR2); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: cryptochrome 3 (TAIR:AT5G24850.1); Has 4854 Blast hits to 4851 proteins in 1205 species: Archae - 82; Bacteria - 2283; Metazoa - 348; Fungi - 105; Plants - 417; Viruses - 0; Other Eukaryotes - 1619 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19521774..19524095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130327.4 → NP_182281.1  photolyase/blue-light receptor 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182281.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22253, Q8LB72
      UniProtKB/TrEMBL
      A0A5S9X7V9, A0A7G2EHP5, Q058P5
      Conserved Domains (1) summary
      cl30787
      Location:120 → 427
      PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LB72.2

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