Zfp239l1 zinc finger protein 239 like 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Zfp239l1provided by RGD
Official Full Name: zinc finger protein 239 like 1provided by RGD
Primary source: RGD:11511731
See related: EnsemblRapid:ENSRNOG00000007076 AllianceGenome:RGD:11511731
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: AABR07055919.1
Summary: Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

Location:: 7q11

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (13328841..13344132, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (12677787..12693526, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (15849774..15928105, complement)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger protein 883-like

Names: zinc finger protein 501; zinc finger protein 763; zinc finger protein 883

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001409057.1 → NP_001395986.1 zinc finger protein 883-like

Status: VALIDATED

Source sequence(s)

JAXUCZ010000007

UniProtKB/TrEMBL

F1M5G7, M0R456

Related

ENSRNOP00000009270.7, ENSRNOT00000009270.9

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086025.1 Reference GRCr8

Range

13328841..13344132 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063262861.1 → XP_063118931.1 zinc finger protein 883-like isoform X3
XM_063262860.1 → XP_063118930.1 zinc finger protein 883-like isoform X2
XM_006241114.5 → XP_006241176.1 zinc finger protein 883-like isoform X1

UniProtKB/TrEMBL

A0A8I6AMT7

Conserved Domains (6) summary

smart00349
Location:36 → 76

KRAB; krueppel associated box

COG5048
Location:243 → 608

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:414 → 434

ZF_C2H2; C2H2 Zn finger [structural motif]

sd00019
Location:330 → 350

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:36 → 75

KRAB; KRAB box

pfam13465
Location:454 → 479

zf-H2C2_2; Zinc-finger double domain
XM_039080059.2 → XP_038935987.1 zinc finger protein 883-like isoform X4

Conserved Domains (3) summary

COG5048
Location:121 → 486

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:292 → 312

ZF_C2H2; C2H2 Zn finger [structural motif]

sd00019
Location:208 → 228

ZF_C2H2; C2H2 Zn finger [structural motif]
XM_039080061.2 → XP_038935989.1 zinc finger protein 883-like isoform X5

Conserved Domains (1) summary

pfam01352
Location:35 → 75

KRAB; KRAB box