U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    P-hydroxybenzoic acid efflux pump subunit [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817427, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    P-hydroxybenzoic acid efflux pump subunit
    Primary source
    TAIR:AT2G28780
    Locus tag
    AT2G28780
    See related
    Araport:AT2G28780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8N16.7; F8N16_7
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (12339851..12343443, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene UDP-XYL synthase 6 Neighboring gene tRNA-His Neighboring gene ncRNA Neighboring gene Pathogenesis-related thaumatin superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Redox signaling mediates the expression of a sulfate-deprivation-inducible microRNA395 in Arabidopsis. Jagadeeswaran G, et al. Plant J, 2014 Jan. PMID 24164591
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At2g28780 was confirmed as another target of miR395 in Arabidopsis.
      Title: Redox signaling mediates the expression of a sulfate-deprivation-inducible microRNA395 in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    NM_128437.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    P-hydroxybenzoic acid efflux pump subunit
    NP_180444.2
    • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12339851..12343443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128437.3 → NP_180444.2  P-hydroxybenzoic acid efflux pump subunit [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180444.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUA5, Q84W96, Q9ZV35
      Conserved Domains (2) summary
      COG4129
      Location:389 → 679
      YgaE; Uncharacterized membrane protein YgaE, UPF0421/DUF939 family [Function unknown]
      pfam13515
      Location:400 → 528
      FUSC_2; Fusaric acid resistance protein-like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools